WebCellSys needs the following data to build initial structures: [ moleculetype ] and [ atom ] names based on an *.itp file. xyz-Coordinate of the residue, as a numpy array. (*.npy file) To add a new forcefield, put above data in a folder and add to cellsys_data directory. If correct, it will be appeared after importing CellSys in python. How to use WebCellSys is a modular software tool for efficient off-lattice simulation of growth and organization processes in multicellular systems in two and three dimensions. It implements an agent-based model that approximates cells as isotropic, elastic and adhesive objects. Cell migration is modeled by an equation of motion for each cell.
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